Season 3, Episode 21: Chapter Eight 'Into Asylum'

Denko is approached by Syler with an offer to help him to find an elusive shape-shifting person, despite the fact that they don't trust eachother. Meanwhile, Peter and Angela hide out in a church where she seeks a path of redemption from everything that she has allowed to happen to her, while Bennett is put in charge to find both of them. In Mexico, Clare and Nathan hide out in a seedy motel where she takes advantage of her own abilities to win money in a drinking shot contest when they run short on money.

Season 3, Episode 20: Chapter Seven 'Cold Snap'

With Nathan now on the run, Emile Danko takes over the operations where Bennett urges him to release Tracy hoping it will lead them to the mysterious 'Rebel'. Then, thanks to a computer glitch, Tracy escapes from Building 21 along with Parkman, Mohinder, and a seriously wounded Daphne. While Parkman and Mohinder take Daphne to a nearby hospital for treatment, Tracy finally learns the identity of 'Rebel'. Meanwhile, Angela finds herself targeted by Danko's hit squad in which she turns to an old friend, named Millie, to help her get out of New York. In Los Angeles, Hiro and Ando find themselves looking after the infant Matt Parkman Jr. and learns that the baby also has a special ability... and is also targeted by Danko's men.

Season 3, Episode 19: Chapter Six 'Shades of Gray'

Now on his own, Sylar finally finds his biological father, Samson Gray, a reclusive, lung-cancer ridden taxidermist, to confront him with questions about his past, but soon learns that Samson is not who he appears to be. Meanwhile, Nathan continues to lock horns with Danko over the hunter's tactics to eliminate people with abilities, after he tries to frame Parkman for an attempted suicide bombing. This leads to both Nathan and Danko going behind each others back to unseat the other. Nathan becomes wary about Danko going rogue and the hunter interrogating Tracy, as well as Nathan's mother, Angela, about Nathan's own ability. In California, Claire takes Alex's old job at the comic book store where she is given a message by 'Rebel' to help out her former nemesis, the puppet master Eric Doyle, when he too is targeted by rouge agents. Also, Hiro and Ando return to California where they are led by clue from Rebel... to an infant Matt Parkman.

Season 3, Episode 18: Chapter Five 'Exposed'

Following a tip from their anonymous source "Rebel", Matt and Peter hurry to rescue Daphne from the holding facilities in 'Building 26' in Washington, and to find evidence that may expose the government's plans to capture those with powers. Meanwhile, Sylar uncovers the truth about his mother after he experiences past memories of his father at a disused diner located deep in the New Mexico desert. In California, Claire must find a way to sneak Alex out of her house which is under observation by FBI Agents, and Mrs. Bennet reluctantly agrees to help. Also, Hunter Danko hatches an explosive plan of his own to trap and kill another hero, and Claire has a run-in with an old villain she captured a while back.